Can transposable element copy number distribution parameters be estimated from natural populations of Drosophila melanogaster?

The copy frequency distribution of a transposable element family in a Drosophila melanogaster natural population is generally characterised by the values of the Charlesworths' model parameters α and β (Charlesworth & Charlesworth, 1983). The estimation of these parameters is made using the observed distribution of the occupied sites in a population sample. Several results have been interpreted as due either to the influence of stochastic factors or to deterministic factors (transposition, excision, selection…). The accuracy of this method was tested by estimations performed on samples from simulated populations. The results show that with the sample size usually used for natural population studies, the confidence intervals are too large to reasonably deduce either the element copy number distribution or the values of transposition and excision rate and selective coefficients.     

The origin of homeostasis in the early earth

Summary An equation is developed that describes the condition of homeostasis in a general molecular system containing catalysts. In a prebiotic environment, this condition first results from a critical level of catalytic feedback in feedback loops containing differing organic molecular species. This critical level results in temporary exponential growth in concentrations of those catalyst species participating in the feedback loops, leading to homeostasis as the steady-state endpoint. None of the molecules in any feedback loop need be self-replicating for this autocatalysis to occur. Homeostasis is regarded as a definition of life at the lowest possible hierarchical level. A general mathematical boundary condition is derived for the critical level of catalytic feedback mentioned above-in effect, an origin of life condition. The paper argues that any natural prebiotic system of organic molecules in an H₂O medium will automatically form many catalytic feedback loops, even if of very low catalytic efficiency. The analysis in this paper indicates that high temperatures strongly increase the efficiency of such catalytic feedback. If the temperature and total concentration of carbon in the system (e.g., in CO₂, CH₄, etc.) are sufficiently high, the critical condition for initial exponential growth will be attained. High initial temperatures for the earth are predicted by the planetesimal accretion model.     

Retinol kinetics in unsupplemented and vitamin A-retinoic acid supplemented neonatal rats: a preliminary model

Vitamin A (VA) metabolism in neonates is virtually uncharacterized. Our objective was to develop a compartmental model of VA metabolism in unsupplemented and VA-supplemented neonatal rats. On postnatal day 4, pups (n = 3/time) received 11,12-[³H]retinol orally, in either oil (control) or VA combined with retinoic acid (VARA) [VA (∼6 mg/kg body weight) + 10% retinoic acid]. Plasma and tissues were collected at 14 time points up to 14 days after dose administration. VARA supplementation rapidly, but transiently, increased total retinol mass in plasma, liver, and lung. It decreased the peak fraction of the dose in plasma. A multi-compartmental model developed to fit plasma [³H]retinol data predicted more extensive recycling of retinol between plasma and tissues in neonates compared with that reported in adults (144 vs. 12–13 times). In VARA pups, the recycling number for retinol between plasma and tissues (100 times) and the time that retinol spent in plasma were both lower compared with controls; VARA also stimulated the uptake of plasma VA into extravascular tissues. A VARA perturbation model indicated that the effect of VARA in stimulating VA uptake into tissues in neonates is both dramatic and transient.     

Management of ecosystem services in mountain forests: Review of indicators and value functions for model based multi-criteria decision analysis

The main ecosystem services (ES) central European mountain forests provide are: protection against gravitational hazards, timber production, recreation, biodiversity conservation and carbon storage, which are all in high demand. These demands make managing mountain forests a challenging task, involving manifold synergies and conflicts between the different ES. There is therefore an urgent need for appropriate concepts and tools for support decisions in forest management and planning (FMP) to take into consideration all ES and to manage the wide variety of information types, parameters and uncertainties involved in assessing the sustainability of ES. Multi-criteria decision analysis (MCDA) provides a suitable set of methods for sustainability evaluations. In this study sustainability means the persistent fulfilment of the required ES. To address all the phases of the FMP process, MCDA and forest models should be applied together, with indicators providing the main interfaces to combine them. This paper aims to: i) review assessment approaches in order to select appropriate and widely accepted indicators for measuring and assessing the effects of different silvicultural management alternatives on forest ES, and ii) present additional standardisation approaches (value functions) for each indicator. Standardisations are necessary to make the different ES comparable and to study synergies and trade-offs between different management objectives in MCDA. The main ES in central European mountain regions are considered, with a clear focus on those indicators that are directly derivable from forest model outputs and that can refer to sustainable forest management practices. The scales considered are that of the single forest stand and of the larger forest management unit. A holistic indicator-based analysis framework for FMP in mountain forests can be built using the indicators and value functions described. The influence of different management alternatives on ES can then be evaluated, taking into consideration the instruments and information on forest management (forest models, inventory) available. All indicators are selected according to existing and approved approaches that only require data that is normally available in operational forest management. The framework can thus be an important element in developing a decision support system for FMP in mountain forests.     

Livestock-driven land use change to model species distributions: Egyptian vulture as a case study

Species distribution models (SDMs) are increasingly used to predict species ranges and their shifts under future scenarios of global environmental change (GEC). SDMs are thus incorporating key drivers of GEC (e.g. climate, land use) to improve predictions of species’ habitat suitability (i.e. as an indicator of species occurrence). Yet, most SDMs incorporating land use only consider dominant land cover types, largely ignoring other key aspects of land use such as land management intensity and livestock. We developed SDMs including main land use components (i.e. land cover, livestock and its management intensity) to assess their relative importance in shaping habitat suitability for the Egyptian vulture, an endangered raptor linked to livestock presence. We modelled current and future (2020 and 2050) habitat suitability for this vulture using an organism-centred approach. This allowed us to account for basic species’ habitat needs (i.e. nesting cliff) while gaining insight into our variables of interest (i.e. livestock and land cover). Once nest-site requirements were fulfilled, land use variables (i.e. openland and sheep and goat density) were the main factors determining species’ habitat suitability. Current suitable area could decrease by up to 6.81% by 2050 under scenarios with rapid economic growth but no focus on environmental conservation and rural development. Local solutions to environmental sustainability and rural development could double current habitat suitability by 2050. Land use is expected to play a key role in determining Egyptian vulture's distribution through land cover change but also through changes in livestock management (i.e. species and stocking density). Change in stocking densities (sheep and goats/km²) becomes thus an indicator of habitat suitability for this vulture in our study area. Abandonment of agro-pastoral practises (i.e. below ∼15–20 sheep and goats/km²) will negatively influence the species distribution. Nonetheless, livestock densities above these values will not further increase habitat suitability. Given the widespread impacts of livestock on ecosystems, the role of livestock and its management intensity in SDMs for other (non-livestock-related) species should be further explored.     

A spatial panel statistical analysis on cultivated land conversion and chinese economic growth

The conflict between cultivated land protection and economic development has become increasingly acute in recent years. Despite, intensive researches made on this conflict, little attention has been paid to the spatial correlation of variables. In view of this, the paper introduces the spatial panel regression model to estimate, and test whether the relationship between economic growth and cultivated land conversion conforms to Kuznets curve. Research results show that the area of converted cultivated land in China exhibits strong spatial auto-correlation; the spatial panel model with time effect and fixed effect is more stable and significant than conventional panel mode, and that the relationship between economic growth and cultivated land conversion agrees with the inverted U-shape of Kuznets curve, with inflection point occurring when average per capita GDP reaches ¥31330.93 (calculated at comparable price of 1999). On the basis of analysis, it is suggested that the government, with a view to developing economy alongside protecting cultivated land, should attach more importance to land use and planning in the future, pay more attention to the spatial correlation of cultivated land planning in adjacent areas and make greater efforts to increase the input–output ratio of land.     

Updated Lagrangian finite element formulations of various biological soft tissue non-linear material models: a comprehensive procedure and review

Simplified material models are commonly used in computational simulation of biological soft tissue as an approximation of the complicated material response and to minimize computational resources. However, the simulation of complex loadings, such as long-duration tissue swelling, necessitates complex models that are not easy to formulate. This paper strives to offer the updated Lagrangian formulation comprehensive procedure of various non-linear material models for the application of finite element analysis of biological soft tissues including a definition of the Cauchy stress and the spatial tangential stiffness. The relationships between water content, osmotic pressure, ionic concentration and the pore pressure stress of the tissue are discussed with the merits of these models and their applications.